IL_4V4J_140

3D structure

PDB id

4V4J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Interactions and Dynamics of the Shine-Dalgarno Helix in the 70S Ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.83 Å

Loop

Sequence

GAGAG*UGGU

Length

9 nucleotides

Bulged bases

4V4J|1|y|A|665

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V4J_140 not in the Motif Atlas

Homologous match to IL_4LFB_029

Geometric discrepancy: 0.2486

The information below is about IL_4LFB_029

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

4V4J|1|y|G|662
4V4J|1|y|A|663
4V4J|1|y|G|664
4V4J|1|y|A|665
4V4J|1|y|G|666
*
4V4J|1|y|U|740
4V4J|1|y|G|741
4V4J|1|y|G|742
4V4J|1|y|U|743

Current chains

Chain y

16S RNA

Nearby chains

Chain g

30S ribosomal protein S6

Chain p

30S ribosomal protein S15

Chain s

30S ribosomal protein S18