IL_4V4P_139

3D structure

PDB id

4V4P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of 70S ribosome with thrS operator and tRNAs.

Experimental method

X-RAY DIFFRACTION

Resolution

5.5 Å

Loop

Sequence

UGGAUG*CUGAAA

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V4P_139 not in the Motif Atlas

Geometric match to IL_4LFB_055

Geometric discrepancy: 0.3288

The information below is about IL_4LFB_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_57885.2

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

4V4P|1|AA|U|25
4V4P|1|AA|G|26
4V4P|1|AA|G|27
4V4P|1|AA|A|28
4V4P|1|AA|U|29
4V4P|1|AA|G|30
*
4V4P|1|AA|C|510
4V4P|1|AA|U|511
4V4P|1|AA|G|512
4V4P|1|AA|A|513
4V4P|1|AA|A|514
4V4P|1|AA|A|515

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain A1

50S ribosomal protein L20

Chain AS

50S ribosomal protein L22