3D structure

PDB id
4V4S (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the whole ribosomal complex.
Experimental method
X-RAY DIFFRACTION
Resolution
6.76 Å

Loop

Sequence
GGGAG*CGUGGAUC
Length
13 nucleotides
Bulged bases
4V4S|1|BA|G|101
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4V4S_062 not in the Motif Atlas
Homologous match to IL_7A0S_004
Geometric discrepancy: 0.4135
The information below is about IL_7A0S_004
Detailed Annotation
Kink-turn
Broad Annotation
No text annotation
Motif group
IL_94910.1
Basepair signature
cWW-tSS-tSH-L-R-R-L-cWW-L
Number of instances in this motif group
3

Unit IDs

4V4S|1|BA|G|81
4V4S|1|BA|G|82
4V4S|1|BA|G|83
4V4S|1|BA|A|84
4V4S|1|BA|G|85
*
4V4S|1|BA|C|97
4V4S|1|BA|G|98
4V4S|1|BA|U|99
4V4S|1|BA|G|101
4V4S|1|BA|G|102
4V4S|1|BA|A|103
4V4S|1|BA|U|104
4V4S|1|BA|C|105

Current chains

Chain BA
23S ribosomal RNA

Nearby chains

Chain B2
50S ribosomal protein L29
Chain BY
50S ribosomal protein 24

Coloring options:


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