IL_4V4S_165

3D structure

PDB id

4V4S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the whole ribosomal complex.

Experimental method

X-RAY DIFFRACTION

Resolution

6.76 Å

Loop

Sequence

CCUG*CAAGGG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V4S_165 not in the Motif Atlas

Geometric match to IL_5TBW_475

Geometric discrepancy: 0.363

The information below is about IL_5TBW_475

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28976.1

Basepair signature

cWW-L-cWW-cSH-R-cWW

Number of instances in this motif group

2

Unit IDs

4V4S|1|BA|C|2520
4V4S|1|BA|C|2521
4V4S|1|BA|U|2522
4V4S|1|BA|G|2523
*
4V4S|1|BA|C|2540
4V4S|1|BA|A|2541
4V4S|1|BA|A|2542
4V4S|1|BA|G|2543
4V4S|1|BA|G|2544
4V4S|1|BA|G|2545

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain B9

50S ribosomal protein L36

Chain BO

50S ribosomal protein L14