3D structure

PDB id
4V4V (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of a pre-translocational E. coli ribosome obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1056
Experimental method
ELECTRON MICROSCOPY
Resolution
15 Å

Loop

Sequence
GAUUAG*CGACGAUC
Length
14 nucleotides
Bulged bases
4V4V|1|AA|U|244, 4V4V|1|AA|C|280
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4V4V_011 not in the Motif Atlas
Homologous match to IL_4LFB_011
Geometric discrepancy: 0.2233
The information below is about IL_4LFB_011
Detailed Annotation
Kink-turn with non-sequential stacking
Broad Annotation
Kink-turn
Motif group
IL_46174.3
Basepair signature
cWW-cSS-tSS-tSH-L-cWW-tHW-cWW
Number of instances in this motif group
5

Unit IDs

4V4V|1|AA|G|242
4V4V|1|AA|A|243
4V4V|1|AA|U|244
4V4V|1|AA|U|245
4V4V|1|AA|A|246
4V4V|1|AA|G|247
*
4V4V|1|AA|C|277
4V4V|1|AA|G|278
4V4V|1|AA|A|279
4V4V|1|AA|C|280
4V4V|1|AA|G|281
4V4V|1|AA|A|282
4V4V|1|AA|U|283
4V4V|1|AA|C|284

Current chains

Chain AA
16S ribosomal RNA

Nearby chains

Chain AQ
30S ribosomal subunit protein S17

Coloring options:


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