IL_4V4V_021

3D structure

PDB id

4V4V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a pre-translocational E. coli ribosome obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1056

Experimental method

ELECTRON MICROSCOPY

Resolution

15 Å

Loop

Sequence

CGCAG*UCAGG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V4V_021 not in the Motif Atlas

Homologous match to IL_4LFB_023

Geometric discrepancy: 0.087

The information below is about IL_4LFB_023

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_17136.7

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

14

Unit IDs

4V4V|1|AA|C|580
4V4V|1|AA|G|581
4V4V|1|AA|C|582
4V4V|1|AA|A|583
4V4V|1|AA|G|584
*
4V4V|1|AA|U|757
4V4V|1|AA|C|758
4V4V|1|AA|A|759
4V4V|1|AA|G|760
4V4V|1|AA|G|761

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AO

30S ribosomal subunit protein S15

Chain AQ

30S ribosomal subunit protein S17