IL_4V4W_046
3D structure
- PDB id
- 4V4W (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a SecM-stalled E. coli ribosome complex obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1143
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 15 Å
Loop
- Sequence
- AAGAAG*CCACU
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V4W_046 not in the Motif Atlas
- Homologous match to IL_5J7L_063
- Geometric discrepancy: 0.3848
- The information below is about IL_5J7L_063
- Detailed Annotation
- Triple sheared related
- Broad Annotation
- Triple sheared
- Motif group
- IL_80231.1
- Basepair signature
- cWW-L-R-L-R-L-R-tHS-cWW
- Number of instances in this motif group
- 2
Unit IDs
4V4W|1|AA|A|1430
4V4W|1|AA|A|1431
4V4W|1|AA|G|1432
4V4W|1|AA|A|1433
4V4W|1|AA|A|1434
4V4W|1|AA|G|1435
*
4V4W|1|AA|C|1466
4V4W|1|AA|C|1467
4V4W|1|AA|A|1468
4V4W|1|AA|C|1469
4V4W|1|AA|U|1470
Current chains
- Chain AA
- 16S ribosomal RNA
Nearby chains
- Chain AT
- 30S ribosomal subunit protein S20
- Chain B0
- Large subunit ribosomal RNA; LSU rRNA
- Chain BN
- 50S ribosomal protein L19
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