IL_4V4W_052
3D structure
- PDB id
- 4V4W (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a SecM-stalled E. coli ribosome complex obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1143
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 15 Å
Loop
- Sequence
- GUAAG*CGUUUAAC
- Length
- 13 nucleotides
- Bulged bases
- 4V4W|1|B0|U|100
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V4W_052 not in the Motif Atlas
- Homologous match to IL_7A0S_004
- Geometric discrepancy: 0.3337
- The information below is about IL_7A0S_004
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_94910.1
- Basepair signature
- cWW-tSS-tSH-L-R-R-L-cWW-L
- Number of instances in this motif group
- 3
Unit IDs
4V4W|1|B0|G|81
4V4W|1|B0|U|82
4V4W|1|B0|A|83
4V4W|1|B0|A|84
4V4W|1|B0|G|85
*
4V4W|1|B0|C|97
4V4W|1|B0|G|98
4V4W|1|B0|U|99
4V4W|1|B0|U|100
4V4W|1|B0|U|102
4V4W|1|B0|A|103
4V4W|1|B0|A|104
4V4W|1|B0|C|105
Current chains
- Chain B0
- 23S ribosomal RNA
Nearby chains
- Chain BS
- 50S ribosomal protein L24
- Chain BW
- 50S ribosomal protein L29
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