IL_4V4W_108

3D structure

PDB id

4V4W (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a SecM-stalled E. coli ribosome complex obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1143

Experimental method

ELECTRON MICROSCOPY

Resolution

15 Å

Loop

Sequence

GGUG*CUAAC

Length

9 nucleotides

Bulged bases

4V4W|1|B0|A|2873

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V4W_108 not in the Motif Atlas

Geometric match to IL_1GID_008

Geometric discrepancy: 0.3342

The information below is about IL_1GID_008

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

36

Unit IDs

4V4W|1|B0|G|2843
4V4W|1|B0|G|2844
4V4W|1|B0|U|2845
4V4W|1|B0|G|2846
*
4V4W|1|B0|C|2870
4V4W|1|B0|U|2871
4V4W|1|B0|A|2872
4V4W|1|B0|A|2873
4V4W|1|B0|C|2874

Current chains

Chain B0

23S ribosomal RNA

Nearby chains

Chain BL

50S ribosomal protein L17

Chain BN

50S ribosomal protein L19