IL_4V5A_414

3D structure

PDB id

4V5A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Ribosome Recycling Factor bound to the Thermus thermophilus 70S ribosome with mRNA, ASL-Phe and tRNA-fMet

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

UG*CACAA

Length

7 nucleotides

Bulged bases

4V5A|1|DA|C|1584

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5A_414 not in the Motif Atlas

Homologous match to IL_9DFE_053

Geometric discrepancy: 0.5961

The information below is about IL_9DFE_053

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_52564.1

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

2

Unit IDs

4V5A|1|DA|U|1415
4V5A|1|DA|G|1416
*
4V5A|1|DA|C|1582
4V5A|1|DA|A|1583
4V5A|1|DA|C|1584
4V5A|1|DA|A|1586
4V5A|1|DA|A|1587

Current chains

Chain DA

23S ribosomal RNA

Nearby chains