IL_4V5B_066

3D structure

PDB id

4V5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of PDF binding helix in complex with the ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.74 Å

Loop

Sequence

UGCAAAC*GGACGUAUA

Length

16 nucleotides

Bulged bases

4V5B|1|AB|A|1801, 4V5B|1|AB|C|1816, 4V5B|1|AB|U|1820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5B_066 not in the Motif Atlas

Homologous match to IL_5J7L_313

Geometric discrepancy: 0.1636

The information below is about IL_5J7L_313

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.5

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

4V5B|1|AB|U|1798
4V5B|1|AB|G|1799
4V5B|1|AB|C|1800
4V5B|1|AB|A|1801
4V5B|1|AB|A|1802
4V5B|1|AB|A|1803
4V5B|1|AB|C|1804
*
4V5B|1|AB|G|1813
4V5B|1|AB|G|1814
4V5B|1|AB|A|1815
4V5B|1|AB|C|1816
4V5B|1|AB|G|1817
4V5B|1|AB|U|1818
4V5B|1|AB|A|1819
4V5B|1|AB|U|1820
4V5B|1|AB|A|1821

Current chains

Chain AB

23S RIBOSOMAL RNA

Nearby chains

Chain AC

50S RIBOSOMAL PROTEIN L2

Chain BA

Small subunit ribosomal RNA; SSU rRNA