IL_4V5B_093

3D structure

PDB id

4V5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of PDF binding helix in complex with the ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.74 Å

Loop

Sequence

UCACU*AAA

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5B_093 not in the Motif Atlas

Homologous match to IL_5J7L_347

Geometric discrepancy: 0.189

The information below is about IL_5J7L_347

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_63596.11

Basepair signature

cWW-cWS-cSH-tWH-cWW-L

Number of instances in this motif group

19

Unit IDs

4V5B|1|AB|U|2680
4V5B|1|AB|C|2681
4V5B|1|AB|A|2682
4V5B|1|AB|C|2683
4V5B|1|AB|U|2684
*
4V5B|1|AB|A|2725
4V5B|1|AB|A|2726
4V5B|1|AB|A|2727

Current chains

Chain AB

23S RIBOSOMAL RNA

Nearby chains

Chain AD

50S RIBOSOMAL PROTEIN L3

Chain AK

50S RIBOSOMAL PROTEIN L14

Chain AP

50S RIBOSOMAL PROTEIN L19