IL_4V5B_180

3D structure

PDB id

4V5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of PDF binding helix in complex with the ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.74 Å

Loop

Sequence

GGG*CC

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5B_180 not in the Motif Atlas

Geometric match to IL_4C7O_002

Geometric discrepancy: 0.2682

The information below is about IL_4C7O_002

Detailed Annotation

Single stack bend

Broad Annotation

Single stack bend

Motif group

IL_90729.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

30

Unit IDs

4V5B|1|CB|G|855
4V5B|1|CB|G|856
4V5B|1|CB|G|857
*
4V5B|1|CB|C|921
4V5B|1|CB|C|922

Current chains

Chain CB

23S RIBOSOMAL RNA

Nearby chains

Chain CW

50S RIBOSOMAL PROTEIN L27

Chain CY

50S RIBOSOMAL PROTEIN L30