IL_4V5B_242

3D structure

PDB id

4V5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of PDF binding helix in complex with the ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.74 Å

Loop

Sequence

CUGAG*CGAGAUGAG

Length

14 nucleotides

Bulged bases

4V5B|1|CB|G|2780

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5B_242 not in the Motif Atlas

Homologous match to IL_5J7L_345

Geometric discrepancy: 0.1207

The information below is about IL_5J7L_345

Detailed Annotation

tSH-tHS-tHW

Broad Annotation

tSH-tHS-tHW

Motif group

IL_04638.3

Basepair signature

cWW-tSH-tHW-tHS-cSH-cWW-L

Number of instances in this motif group

5

Unit IDs

4V5B|1|CB|C|2636
4V5B|1|CB|U|2637
4V5B|1|CB|G|2638
4V5B|1|CB|A|2639
4V5B|1|CB|G|2640
*
4V5B|1|CB|C|2774
4V5B|1|CB|G|2775
4V5B|1|CB|A|2776
4V5B|1|CB|G|2777
4V5B|1|CB|A|2778
4V5B|1|CB|U|2779
4V5B|1|CB|G|2780
4V5B|1|CB|A|2781
4V5B|1|CB|G|2782

Current chains

Chain CB

23S RIBOSOMAL RNA

Nearby chains

Chain CD

50S RIBOSOMAL PROTEIN L3

Chain CJ

50S RIBOSOMAL PROTEIN L13