IL_4V5B_264

3D structure

PDB id

4V5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of PDF binding helix in complex with the ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.74 Å

Loop

Sequence

GAUUAG*CGACGAUC

Length

14 nucleotides

Bulged bases

4V5B|1|DA|U|244, 4V5B|1|DA|C|280

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5B_264 not in the Motif Atlas

Homologous match to IL_4LFB_011

Geometric discrepancy: 0.1713

The information below is about IL_4LFB_011

Detailed Annotation

Kink-turn with non-sequential stacking

Broad Annotation

Kink-turn

Motif group

IL_46174.3

Basepair signature

cWW-cSS-tSS-tSH-L-cWW-tHW-cWW

Number of instances in this motif group

5

Unit IDs

4V5B|1|DA|G|242
4V5B|1|DA|A|243
4V5B|1|DA|U|244
4V5B|1|DA|U|245
4V5B|1|DA|A|246
4V5B|1|DA|G|247
*
4V5B|1|DA|C|277
4V5B|1|DA|G|278
4V5B|1|DA|A|279
4V5B|1|DA|C|280
4V5B|1|DA|G|281
4V5B|1|DA|A|282
4V5B|1|DA|U|283
4V5B|1|DA|C|284

Current chains

Chain DA

16S RIBOSOMAL RNA

Nearby chains

Chain DL

30S RIBOSOMAL PROTEIN S12

Chain DQ

30S RIBOSOMAL PROTEIN S17