IL_4V5B_350

3D structure

PDB id

4V5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of PDF binding helix in complex with the ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.74 Å

Loop

Sequence

CGCG*CGUAG

Length

9 nucleotides

Bulged bases

4V5B|1|CA|A|66

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5B_350 not in the Motif Atlas

Geometric match to IL_1GID_008

Geometric discrepancy: 0.3445

The information below is about IL_1GID_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_85033.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

36

Unit IDs

4V5B|1|CA|C|17
4V5B|1|CA|G|18
4V5B|1|CA|C|19
4V5B|1|CA|G|20
*
4V5B|1|CA|C|63
4V5B|1|CA|G|64
4V5B|1|CA|U|65
4V5B|1|CA|A|66
4V5B|1|CA|G|67

Current chains

Chain CA

5S RIBOSOMAL RNA

Nearby chains

Chain CB

Large subunit ribosomal RNA; LSU rRNA