IL_4V5H_068

3D structure

PDB id

4V5H (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.Coli 70s Ribosome Stalled During Translation Of Tnac Leader Peptide.

Experimental method

ELECTRON MICROSCOPY

Resolution

5.8 Å

Loop

Sequence

GUC*GUC

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5H_068 not in the Motif Atlas

Homologous match to IL_5E81_371

Geometric discrepancy: 0.3816

The information below is about IL_5E81_371

Detailed Annotation

Self complementary

Broad Annotation

Self complementary

Motif group

IL_86319.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

269

Unit IDs

4V5H|1|AV|G|29
4V5H|1|AV|U|30
4V5H|1|AV|C|31
*
4V5H|1|AV|G|39
4V5H|1|AV|U|40
4V5H|1|AV|C|41

Current chains

Chain AV

P-SITE TRNA

Nearby chains

Chain AA

Small subunit ribosomal RNA; SSU rRNA

Chain AI

30S RIBOSOMAL PROTEIN S9

Chain AM

30S RIBOSOMAL PROTEIN S13

Chain AX

MRNA