IL_4V5H_154

3D structure

PDB id

4V5H (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.Coli 70s Ribosome Stalled During Translation Of Tnac Leader Peptide.

Experimental method

ELECTRON MICROSCOPY

Resolution

5.8 Å

Loop

Sequence

AA*UACU

Length

6 nucleotides

Bulged bases

4V5H|1|BB|A|2439

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5H_154 not in the Motif Atlas

Homologous match to IL_7A0S_076

Geometric discrepancy: 0.107

The information below is about IL_7A0S_076

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_34520.1

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

58

Unit IDs

4V5H|1|BB|A|2070
4V5H|1|BB|A|2071
*
4V5H|1|BB|U|2438
4V5H|1|BB|A|2439
4V5H|1|BB|C|2440
4V5H|1|BB|U|2441

Current chains

Chain BB

23S RIBOSOMAL RNA

Nearby chains

Chain AV

Transfer RNA; tRNA

Chain AZ

POLY-ALA NASCENT CHAIN

Chain BC

50S RIBOSOMAL PROTEIN L2