IL_4V5H_176

3D structure

PDB id

4V5H (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.Coli 70s Ribosome Stalled During Translation Of Tnac Leader Peptide.

Experimental method

ELECTRON MICROSCOPY

Resolution

5.8 Å

Loop

Sequence

UCACU*AAA

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5H_176 not in the Motif Atlas

Homologous match to IL_5J7L_347

Geometric discrepancy: 0.1389

The information below is about IL_5J7L_347

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_63596.11

Basepair signature

cWW-cWS-cSH-tWH-cWW-L

Number of instances in this motif group

19

Unit IDs

4V5H|1|BB|U|2680
4V5H|1|BB|C|2681
4V5H|1|BB|A|2682
4V5H|1|BB|C|2683
4V5H|1|BB|U|2684
*
4V5H|1|BB|A|2725
4V5H|1|BB|A|2726
4V5H|1|BB|A|2727

Current chains

Chain BB

23S RIBOSOMAL RNA

Nearby chains

Chain BD

50S RIBOSOMAL PROTEIN L3

Chain BK

50S RIBOSOMAL PROTEIN L14

Chain BP

50S RIBOSOMAL PROTEIN L19