IL_4V5M_023

3D structure

PDB id

4V5M (explore in PDB, NAKB, or RNA 3D Hub)

Description

tRNA tranlocation on the 70S ribosome: the pre-translocational translocation intermediate TI(PRE)

Experimental method

ELECTRON MICROSCOPY

Resolution

7.8 Å

Loop

Sequence

UGUAG*UGAGG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5M_023 not in the Motif Atlas

Homologous match to IL_4LFB_023

Geometric discrepancy: 0.1449

The information below is about IL_4LFB_023

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_17136.7

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

14

Unit IDs

4V5M|1|AA|U|580
4V5M|1|AA|G|581
4V5M|1|AA|U|582
4V5M|1|AA|A|583
4V5M|1|AA|G|584
*
4V5M|1|AA|U|757
4V5M|1|AA|G|758
4V5M|1|AA|A|759
4V5M|1|AA|G|760
4V5M|1|AA|G|761

Current chains

Chain AA

16S RRNA

Nearby chains

Chain AH

30S RIBOSOMAL PROTEIN S8

Chain AL

30S RIBOSOMAL PROTEIN S12

Chain AO

30S RIBOSOMAL PROTEIN S15

Chain AQ

30S RIBOSOMAL PROTEIN S17