IL_4V5M_034

3D structure

PDB id

4V5M (explore in PDB, NAKB, or RNA 3D Hub)

Description

tRNA tranlocation on the 70S ribosome: the pre-translocational translocation intermediate TI(PRE)

Experimental method

ELECTRON MICROSCOPY

Resolution

7.8 Å

Loop

Sequence

GGAGUACG*UGAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5M_034 not in the Motif Atlas

Homologous match to IL_4LFB_034

Geometric discrepancy: 0.0903

The information below is about IL_4LFB_034

Detailed Annotation

8x6 Sarcin-Ricin with inserted Y; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_41756.4

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

Number of instances in this motif group

4

Unit IDs

4V5M|1|AA|G|887
4V5M|1|AA|G|888
4V5M|1|AA|A|889
4V5M|1|AA|G|890
4V5M|1|AA|U|891
4V5M|1|AA|A|892
4V5M|1|AA|C|893
4V5M|1|AA|G|894
*
4V5M|1|AA|U|905
4V5M|1|AA|G|906
4V5M|1|AA|A|907
4V5M|1|AA|A|908
4V5M|1|AA|A|909
4V5M|1|AA|C|910

Current chains

Chain AA

16S RRNA

Nearby chains

Chain AL

30S RIBOSOMAL PROTEIN S12

Chain AQ

30S RIBOSOMAL PROTEIN S17