IL_4V5O_015

3D structure

PDB id

4V5O (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYSTAL STRUCTURE OF THE EUKARYOTIC 40S RIBOSOMAL SUBUNIT IN COMPLEX WITH INITIATION FACTOR 1.

Experimental method

X-RAY DIFFRACTION

Resolution

3.93 Å

Loop

Sequence

UAUCAG*CAGUCACG

Length

14 nucleotides

Bulged bases

4V5O|1|AA|U|304, 4V5O|1|AA|U|342

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5O_015 not in the Motif Atlas

Homologous match to IL_4V88_402

Geometric discrepancy: 0.1663

The information below is about IL_4V88_402

Detailed Annotation

Kink-turn with non-sequential stacking

Broad Annotation

Kink-turn

Motif group

IL_45067.5

Basepair signature

cWW-tSH-tSS-tHS-R-cWW-cWW-R

Number of instances in this motif group

16

Unit IDs

4V5O|1|AA|U|302
4V5O|1|AA|A|303
4V5O|1|AA|U|304
4V5O|1|AA|C|305
4V5O|1|AA|A|306
4V5O|1|AA|G|307
*
4V5O|1|AA|C|339
4V5O|1|AA|A|340
4V5O|1|AA|G|341
4V5O|1|AA|U|342
4V5O|1|AA|C|343
4V5O|1|AA|A|344
4V5O|1|AA|C|345
4V5O|1|AA|G|346

Current chains

Chain AA

18S RRNA

Nearby chains

Chain A2

40S RIBOSOMAL PROTEIN S8

Chain AL

40S RIBOSOMAL PROTEIN S12

Chain AQ

RIBOSOMAL PROTEIN S17 CONTAINING PROTEIN