IL_4V5O_028

3D structure

PDB id

4V5O (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYSTAL STRUCTURE OF THE EUKARYOTIC 40S RIBOSOMAL SUBUNIT IN COMPLEX WITH INITIATION FACTOR 1.

Experimental method

X-RAY DIFFRACTION

Resolution

3.93 Å

Loop

Sequence

GUGCCAG*CGGUAAUUC

Length

16 nucleotides

Bulged bases

4V5O|1|AA|A|573, 4V5O|1|AA|U|575

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5O_028 not in the Motif Atlas

Homologous match to IL_4V88_415

Geometric discrepancy: 0.1485

The information below is about IL_4V88_415

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_54177.1

Basepair signature

cWW-cSW-tWH-L-R-L-R-tHS-cWW

Number of instances in this motif group

5

Unit IDs

4V5O|1|AA|G|556
4V5O|1|AA|U|557
4V5O|1|AA|G|558
4V5O|1|AA|C|559
4V5O|1|AA|C|560
4V5O|1|AA|A|561
4V5O|1|AA|G|562
*
4V5O|1|AA|C|569
4V5O|1|AA|G|570
4V5O|1|AA|G|571
4V5O|1|AA|U|572
4V5O|1|AA|A|573
4V5O|1|AA|A|574
4V5O|1|AA|U|575
4V5O|1|AA|U|576
4V5O|1|AA|C|577

Current chains

Chain AA

18S RRNA

Nearby chains

Chain AC

KH DOMAIN CONTAINING PROTEIN

Chain AL

40S RIBOSOMAL PROTEIN S12

Chain AX

RPS30E