IL_4V5O_033

3D structure

PDB id

4V5O (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYSTAL STRUCTURE OF THE EUKARYOTIC 40S RIBOSOMAL SUBUNIT IN COMPLEX WITH INITIATION FACTOR 1.

Experimental method

X-RAY DIFFRACTION

Resolution

3.93 Å

Loop

Sequence

AUUUC*GUGU

Length

9 nucleotides

Bulged bases

4V5O|1|AA|U|648

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5O_033 not in the Motif Atlas

Geometric match to IL_5EW4_002

Geometric discrepancy: 0.3109

The information below is about IL_5EW4_002

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

4V5O|1|AA|A|646
4V5O|1|AA|U|647
4V5O|1|AA|U|648
4V5O|1|AA|U|649
4V5O|1|AA|C|650
*
4V5O|1|AA|G|659
4V5O|1|AA|U|660
4V5O|1|AA|G|661
4V5O|1|AA|U|662

Current chains

Chain AA

18S RRNA

Nearby chains

Chain AZ

RPS21E