IL_4V5O_040

3D structure

PDB id

4V5O (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYSTAL STRUCTURE OF THE EUKARYOTIC 40S RIBOSOMAL SUBUNIT IN COMPLEX WITH INITIATION FACTOR 1.

Experimental method

X-RAY DIFFRACTION

Resolution

3.93 Å

Loop

Sequence

UGGGG*CAAA

Length

9 nucleotides

Bulged bases

4V5O|1|AA|G|854

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5O_040 not in the Motif Atlas

Geometric match to IL_4V88_431

Geometric discrepancy: 0.1071

The information below is about IL_4V88_431

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_67085.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

55

Unit IDs

4V5O|1|AA|U|852
4V5O|1|AA|G|853
4V5O|1|AA|G|854
4V5O|1|AA|G|855
4V5O|1|AA|G|856
*
4V5O|1|AA|C|928
4V5O|1|AA|A|929
4V5O|1|AA|A|930
4V5O|1|AA|A|931

Current chains

Chain AA

18S RRNA

Nearby chains

Chain A4

40S RIBOSOMAL PROTEIN S3A

Chain A5

RIBOSOMAL PROTEIN S26E CONTAINING PROTEIN

Chain AO

RPS13E