IL_4V5O_044

3D structure

PDB id

4V5O (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYSTAL STRUCTURE OF THE EUKARYOTIC 40S RIBOSOMAL SUBUNIT IN COMPLEX WITH INITIATION FACTOR 1.

Experimental method

X-RAY DIFFRACTION

Resolution

3.93 Å

Loop

Sequence

CAAAG*CGUAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5O_044 not in the Motif Atlas

Homologous match to IL_4V88_436

Geometric discrepancy: 0.1576

The information below is about IL_4V88_436

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_17136.4

Basepair signature

cWW-R-L-tHS-tHW-cWW

Number of instances in this motif group

18

Unit IDs

4V5O|1|AA|C|968
4V5O|1|AA|A|969
4V5O|1|AA|A|970
4V5O|1|AA|A|971
4V5O|1|AA|G|972
*
4V5O|1|AA|C|988
4V5O|1|AA|G|989
4V5O|1|AA|U|990
4V5O|1|AA|A|991
4V5O|1|AA|G|992

Current chains

Chain AA

18S RRNA

Nearby chains

Chain AK

RPS14E