IL_4V5O_048

3D structure

PDB id

4V5O (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYSTAL STRUCTURE OF THE EUKARYOTIC 40S RIBOSOMAL SUBUNIT IN COMPLEX WITH INITIATION FACTOR 1.

Experimental method

X-RAY DIFFRACTION

Resolution

3.93 Å

Loop

Sequence

GAAGUAUG*UGAAAC

Length

14 nucleotides

Bulged bases

4V5O|1|AA|U|1089

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5O_048 not in the Motif Atlas

Geometric match to IL_1NBS_007

Geometric discrepancy: 0.2105

The information below is about IL_1NBS_007

Detailed Annotation

7x6 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_26307.2

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

9

Unit IDs

4V5O|1|AA|G|1083
4V5O|1|AA|A|1084
4V5O|1|AA|A|1085
4V5O|1|AA|G|1086
4V5O|1|AA|U|1087
4V5O|1|AA|A|1088
4V5O|1|AA|U|1089
4V5O|1|AA|G|1090
*
4V5O|1|AA|U|1102
4V5O|1|AA|G|1103
4V5O|1|AA|A|1104
4V5O|1|AA|A|1105
4V5O|1|AA|A|1106
4V5O|1|AA|C|1107

Current chains

Chain AA

18S RRNA

Nearby chains

Chain AL

40S RIBOSOMAL PROTEIN S12