IL_4V5O_061
3D structure
- PDB id
- 4V5O (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CRYSTAL STRUCTURE OF THE EUKARYOTIC 40S RIBOSOMAL SUBUNIT IN COMPLEX WITH INITIATION FACTOR 1.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.93 Å
Loop
- Sequence
- UGG*UCUGUGA
- Length
- 10 nucleotides
- Bulged bases
- 4V5O|1|AA|U|1403, 4V5O|1|AA|G|1406
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V5O_061 not in the Motif Atlas
- Homologous match to IL_4V88_451
- Geometric discrepancy: 0.1798
- The information below is about IL_4V88_451
- Detailed Annotation
- Minor groove platform with extra cWW
- Broad Annotation
- Minor groove platform
- Motif group
- IL_97255.1
- Basepair signature
- cWW-tSH-L-cWW-L
- Number of instances in this motif group
- 5
Unit IDs
4V5O|1|AA|U|1248
4V5O|1|AA|G|1249
4V5O|1|AA|G|1250
*
4V5O|1|AA|U|1401
4V5O|1|AA|C|1402
4V5O|1|AA|U|1403
4V5O|1|AA|G|1404
4V5O|1|AA|U|1405
4V5O|1|AA|G|1406
4V5O|1|AA|A|1407
Current chains
- Chain AA
- 18S RRNA
Nearby chains
- Chain A7
- PLECTIN/S10 DOMAIN CONTAINING PROTEIN
- Chain A9
- RPS31E
- Chain AC
- KH DOMAIN CONTAINING PROTEIN
- Chain AJ
- RIBOSOMAL PROTEIN S10 CONTAINING PROTEIN
- Chain AN
- RPS29E
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