IL_4V5O_171

3D structure

PDB id

4V5O (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYSTAL STRUCTURE OF THE EUKARYOTIC 40S RIBOSOMAL SUBUNIT IN COMPLEX WITH INITIATION FACTOR 1.

Experimental method

X-RAY DIFFRACTION

Resolution

3.93 Å

Loop

Sequence

GGA*UUUU

Length

7 nucleotides

Bulged bases

4V5O|1|AA|U|937

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5O_171 not in the Motif Atlas

Homologous match to IL_8P9A_418

Geometric discrepancy: 0.3754

The information below is about IL_8P9A_418

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

174

Unit IDs

4V5O|1|AA|G|845
4V5O|1|AA|G|846
4V5O|1|AA|A|847
*
4V5O|1|AA|U|936
4V5O|1|AA|U|937
4V5O|1|AA|U|938
4V5O|1|AA|U|939

Current chains

Chain AA

18S RRNA

Nearby chains

Chain A3

RPS7E

Chain A6

RPS27E

Chain AO

RPS13E