IL_4V61_019

3D structure

PDB id

4V61 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Homology model for the Spinach chloroplast 30S subunit fitted to 9.4A cryo-EM map of the 70S chlororibosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

9.4 Å

Loop

Sequence

GUGCCAG*CGGUAAGAC

Length

16 nucleotides

Bulged bases

4V61|1|AA|A|480, 4V61|1|AA|G|482, 4V61|1|AA|A|483

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V61_019 not in the Motif Atlas

Geometric match to IL_4V88_415

Geometric discrepancy: 0.1883

The information below is about IL_4V88_415

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_54177.1

Basepair signature

cWW-cSW-tWH-L-R-L-R-tHS-cWW

Number of instances in this motif group

5

Unit IDs

4V61|1|AA|G|463
4V61|1|AA|U|464
4V61|1|AA|G|465
4V61|1|AA|C|466
4V61|1|AA|C|467
4V61|1|AA|A|468
4V61|1|AA|G|469
*
4V61|1|AA|C|476
4V61|1|AA|G|477
4V61|1|AA|G|478
4V61|1|AA|U|479
4V61|1|AA|A|480
4V61|1|AA|A|481
4V61|1|AA|G|482
4V61|1|AA|A|483
4V61|1|AA|C|484

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AC

Ribosomal Protein S3

Chain AL

Ribosomal Protein S12