IL_4V61_027

3D structure

PDB id

4V61 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Homology model for the Spinach chloroplast 30S subunit fitted to 9.4A cryo-EM map of the 70S chlororibosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

9.4 Å

Loop

Sequence

UGGAG*CGUAGAGA

Length

13 nucleotides

Bulged bases

4V61|1|AA|A|650

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V61_027 not in the Motif Atlas

Homologous match to IL_5J7L_035

Geometric discrepancy: 0.2024

The information below is about IL_5J7L_035

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_01488.3

Basepair signature

cWW-tSS-tSH-L-R-tHS-L-cWW

Number of instances in this motif group

10

Unit IDs

4V61|1|AA|U|632
4V61|1|AA|G|633
4V61|1|AA|G|634
4V61|1|AA|A|635
4V61|1|AA|G|636
*
4V61|1|AA|C|647
4V61|1|AA|G|648
4V61|1|AA|U|649
4V61|1|AA|A|650
4V61|1|AA|G|651
4V61|1|AA|A|652
4V61|1|AA|G|653
4V61|1|AA|A|654

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AK

Ribosomal Protein S11

Chain BA

Large subunit ribosomal RNA; LSU rRNA