IL_4V61_073

3D structure

PDB id

4V61 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Homology model for the Spinach chloroplast 30S subunit fitted to 9.4A cryo-EM map of the 70S chlororibosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

9.4 Å

Loop

Sequence

GAACC*GAGCUAGC

Length

13 nucleotides

Bulged bases

4V61|1|BA|G|812, 4V61|1|BA|G|816

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V61_073 not in the Motif Atlas

Homologous match to IL_7A0S_015

Geometric discrepancy: 0.2667

The information below is about IL_7A0S_015

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_73855.2

Basepair signature

cWW-L-R-L-R-tWH-L-cWW

Number of instances in this motif group

11

Unit IDs

4V61|1|BA|G|685
4V61|1|BA|A|686
4V61|1|BA|A|687
4V61|1|BA|C|688
4V61|1|BA|C|689
*
4V61|1|BA|G|810
4V61|1|BA|A|811
4V61|1|BA|G|812
4V61|1|BA|C|813
4V61|1|BA|U|814
4V61|1|BA|A|815
4V61|1|BA|G|816
4V61|1|BA|C|817

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BG

Ribosomal Protein L4

Chain BN

Ribosomal Protein L15