IL_4V61_125

3D structure

PDB id

4V61 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Homology model for the Spinach chloroplast 30S subunit fitted to 9.4A cryo-EM map of the 70S chlororibosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

9.4 Å

Loop

Sequence

CUAUG*CUAG

Length

9 nucleotides

Bulged bases

4V61|1|BA|U|2082

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V61_125 not in the Motif Atlas

Geometric match to IL_5EW4_002

Geometric discrepancy: 0.3197

The information below is about IL_5EW4_002

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_71194.3

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

41

Unit IDs

4V61|1|BA|C|2079
4V61|1|BA|U|2080
4V61|1|BA|A|2081
4V61|1|BA|U|2082
4V61|1|BA|G|2083
*
4V61|1|BA|C|2459
4V61|1|BA|U|2460
4V61|1|BA|A|2461
4V61|1|BA|G|2462

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BG

Ribosomal Protein L4