IL_4V61_147
3D structure
- PDB id
- 4V61 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Homology model for the Spinach chloroplast 30S subunit fitted to 9.4A cryo-EM map of the 70S chlororibosome.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 9.4 Å
Loop
- Sequence
- UGUAC*GGUAG
- Length
- 10 nucleotides
- Bulged bases
- 4V61|1|BA|U|2706, 4V61|1|BA|A|2707
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V61_147 not in the Motif Atlas
- Homologous match to IL_5J7L_348
- Geometric discrepancy: 0.2021
- The information below is about IL_5J7L_348
- Detailed Annotation
- UAA/GAN related, with intercalation
- Broad Annotation
- UAA/GAN related, with intercalation
- Motif group
- IL_23774.1
- Basepair signature
- cWW-L-R-L-tHS-cWW
- Number of instances in this motif group
- 11
Unit IDs
4V61|1|BA|U|2704
4V61|1|BA|G|2705
4V61|1|BA|U|2706
4V61|1|BA|A|2707
4V61|1|BA|C|2708
*
4V61|1|BA|G|2736
4V61|1|BA|G|2737
4V61|1|BA|U|2738
4V61|1|BA|A|2739
4V61|1|BA|G|2740
Current chains
- Chain BA
- 23S rRNA
Nearby chains
- Chain BC
- 4.8S rRNA
- Chain BF
- Ribosomal Protein L3
- Chain BP
- Ribosomal Protein L17
- Chain BR
- Ribosomal Protein L19
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