IL_4V61_172

3D structure

PDB id

4V61 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Homology model for the Spinach chloroplast 30S subunit fitted to 9.4A cryo-EM map of the 70S chlororibosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

9.4 Å

Loop

Sequence

ACCA*UGU

Length

7 nucleotides

Bulged bases

4V61|1|BA|C|1023

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V61_172 not in the Motif Atlas

Geometric match to IL_7ECN_001

Geometric discrepancy: 0.2743

The information below is about IL_7ECN_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.5

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

238

Unit IDs

4V61|1|BA|A|1021
4V61|1|BA|C|1022
4V61|1|BA|C|1023
4V61|1|BA|A|1024
*
4V61|1|BA|U|1186
4V61|1|BA|G|1187
4V61|1|BA|U|1188

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BS

Ribosomal Protein L20

Chain BT

Ribosomal Protein L21