IL_4V61_186

3D structure

PDB id

4V61 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Homology model for the Spinach chloroplast 30S subunit fitted to 9.4A cryo-EM map of the 70S chlororibosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

9.4 Å

Loop

Sequence

UCAAGG*CCGAAG

Length

12 nucleotides

Bulged bases

4V61|1|BA|G|1902

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V61_186 not in the Motif Atlas

Geometric match to IL_9E6Q_072

Geometric discrepancy: 0.3703

The information below is about IL_9E6Q_072

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_74322.2

Basepair signature

cWW-tSH-L-R-L-R-L-R-cWW

Number of instances in this motif group

6

Unit IDs

4V61|1|BA|U|1861
4V61|1|BA|C|1862
4V61|1|BA|A|1863
4V61|1|BA|A|1864
4V61|1|BA|G|1865
4V61|1|BA|G|1866
*
4V61|1|BA|C|1900
4V61|1|BA|C|1901
4V61|1|BA|G|1902
4V61|1|BA|A|1903
4V61|1|BA|A|1904
4V61|1|BA|G|1905

Current chains

Chain BA

23S rRNA

Nearby chains