IL_4V66_071

3D structure

PDB id

4V66 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the E. coli ribosome and the tRNAs in Post-accommodation state

Experimental method

ELECTRON MICROSCOPY

Resolution

9 Å

Loop

Sequence

GCACU*AAAC

Length

9 nucleotides

Bulged bases

4V66|1|BB|A|910, 4V66|1|BB|A|911

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V66_071 not in the Motif Atlas

Geometric match to IL_5J7L_347

Geometric discrepancy: 0.2537

The information below is about IL_5J7L_347

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_63596.11

Basepair signature

cWW-cWS-cSH-tWH-cWW-L

Number of instances in this motif group

19

Unit IDs

4V66|1|BB|G|864
4V66|1|BB|C|865
4V66|1|BB|A|866
4V66|1|BB|C|867
4V66|1|BB|U|868
*
4V66|1|BB|A|909
4V66|1|BB|A|910
4V66|1|BB|A|911
4V66|1|BB|C|912

Current chains

Chain BB

23S rRNA

Nearby chains

Chain BA

5S ribosomal RNA; 5S rRNA

Chain BF

50S ribosomal protein L16