IL_4V68_108

3D structure

PDB id

4V68 (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus 70S ribosome in complex with mRNA, tRNAs and EF-Tu.GDP.kirromycin ternary complex, fitted to a 6.4 A Cryo-EM map.

Experimental method

ELECTRON MICROSCOPY

Resolution

6.4 Å

Loop

Sequence

GCAAUG*CAGC

Length

10 nucleotides

Bulged bases

4V68|1|BA|G|1332

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V68_108 not in the Motif Atlas

Geometric match to IL_4V88_408

Geometric discrepancy: 0.3757

The information below is about IL_4V88_408

Detailed Annotation

C-loop with extra cWW pair

Broad Annotation

C-loop

Motif group

IL_11347.2

Basepair signature

cWW-cWW-L-cWW-L

Number of instances in this motif group

3

Unit IDs

4V68|1|BA|G|1319
4V68|1|BA|C|1320
4V68|1|BA|A|1321
4V68|1|BA|A|1322
4V68|1|BA|U|1323
4V68|1|BA|G|1324
*
4V68|1|BA|C|1330
4V68|1|BA|A|1331
4V68|1|BA|G|1332
4V68|1|BA|C|1333

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BW

50S ribosomal protein L22

Chain BX

50S ribosomal protein L23