IL_4V68_132

3D structure

PDB id

4V68 (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus 70S ribosome in complex with mRNA, tRNAs and EF-Tu.GDP.kirromycin ternary complex, fitted to a 6.4 A Cryo-EM map.

Experimental method

ELECTRON MICROSCOPY

Resolution

6.4 Å

Loop

Sequence

CGAAAUUCCUUG*CCUG

Length

16 nucleotides

Bulged bases

4V68|1|BA|A|1938, 4V68|1|BA|U|1944, 4V68|1|BA|U|1963

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V68_132 not in the Motif Atlas

Homologous match to IL_4WF9_077

Geometric discrepancy: 0.1229

The information below is about IL_4WF9_077

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_84014.1

Basepair signature

cWW-L-R-cHW-cWW-L-L-tSW-L

Number of instances in this motif group

8

Unit IDs

4V68|1|BA|C|1934
4V68|1|BA|G|1935
4V68|1|BA|A|1936
4V68|1|BA|A|1937
4V68|1|BA|A|1938
4V68|1|BA|U|1939
4V68|1|BA|U|1940
4V68|1|BA|C|1941
4V68|1|BA|C|1942
4V68|1|BA|U|1943
4V68|1|BA|U|1944
4V68|1|BA|G|1945
*
4V68|1|BA|C|1961
4V68|1|BA|C|1962
4V68|1|BA|U|1963
4V68|1|BA|G|1964

Current chains

Chain BA

23S rRNA

Nearby chains

Chain AA

Small subunit ribosomal RNA; SSU rRNA

Chain BD

50S ribosomal protein L2