IL_4V68_185

3D structure

PDB id

4V68 (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus 70S ribosome in complex with mRNA, tRNAs and EF-Tu.GDP.kirromycin ternary complex, fitted to a 6.4 A Cryo-EM map.

Experimental method

ELECTRON MICROSCOPY

Resolution

6.4 Å

Loop

Sequence

GGUAG*CGCC

Length

9 nucleotides

Bulged bases

4V68|1|BA|A|1490

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V68_185 not in the Motif Atlas

Geometric match to IL_1GID_008

Geometric discrepancy: 0.3696

The information below is about IL_1GID_008

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

36

Unit IDs

4V68|1|BA|G|1487
4V68|1|BA|G|1488
4V68|1|BA|U|1489
4V68|1|BA|A|1490
4V68|1|BA|G|1491
*
4V68|1|BA|C|1499
4V68|1|BA|G|1500
4V68|1|BA|C|1501
4V68|1|BA|C|1502

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BD

50S ribosomal protein L2