IL_4V69_056

3D structure

PDB id

4V69 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ternary complex-bound E.coli 70S ribosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

6.7 Å

Loop

Sequence

GAAG*CGGACC

Length

10 nucleotides

Bulged bases

4V69|1|AA|A|1257, 4V69|1|AA|A|1280

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V69_056 not in the Motif Atlas

Homologous match to IL_5J7L_055

Geometric discrepancy: 0.5364

The information below is about IL_5J7L_055

Detailed Annotation

180 degree turn

Broad Annotation

No text annotation

Motif group

IL_11344.2

Basepair signature

cWW-cSS-L-cWW

Number of instances in this motif group

2

Unit IDs

4V69|1|AA|G|1255
4V69|1|AA|A|1256
4V69|1|AA|A|1257
4V69|1|AA|G|1258
*
4V69|1|AA|C|1277
4V69|1|AA|G|1278
4V69|1|AA|G|1279
4V69|1|AA|A|1280
4V69|1|AA|C|1281
4V69|1|AA|C|1282

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AC

30S ribosomal protein S3

Chain AJ

30S ribosomal protein S10

Chain AN

30S ribosomal protein S14