IL_4V69_113

3D structure

PDB id

4V69 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ternary complex-bound E.coli 70S ribosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

6.7 Å

Loop

Sequence

GUUG*CAUC

Length

8 nucleotides

Bulged bases

4V69|1|BB|U|1061

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V69_113 not in the Motif Atlas

Homologous match to IL_6PRV_001

Geometric discrepancy: 0.2324

The information below is about IL_6PRV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28482.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

4

Unit IDs

4V69|1|BB|G|1059
4V69|1|BB|U|1060
4V69|1|BB|U|1061
4V69|1|BB|G|1062
*
4V69|1|BB|C|1076
4V69|1|BB|A|1077
4V69|1|BB|U|1078
4V69|1|BB|C|1079

Current chains

Chain BB

23S ribosomal RNA

Nearby chains

Chain BI

50S ribosomal protein L11

Chain BM

50S ribosomal protein L16