IL_4V69_117

3D structure

PDB id

4V69 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ternary complex-bound E.coli 70S ribosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

6.7 Å

Loop

Sequence

CUGCGAAG*UGGAG

Length

13 nucleotides

Bulged bases

4V69|1|BB|C|1211

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V69_117 not in the Motif Atlas

Homologous match to IL_7A0S_043

Geometric discrepancy: 0.2044

The information below is about IL_7A0S_043

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_90775.1

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

23

Unit IDs

4V69|1|BB|C|1208
4V69|1|BB|U|1209
4V69|1|BB|G|1210
4V69|1|BB|C|1211
4V69|1|BB|G|1212
4V69|1|BB|A|1213
4V69|1|BB|A|1214
4V69|1|BB|G|1215
*
4V69|1|BB|U|1234
4V69|1|BB|G|1235
4V69|1|BB|G|1236
4V69|1|BB|A|1237
4V69|1|BB|G|1238

Current chains

Chain BB

23S ribosomal RNA

Nearby chains

Chain BQ

50S ribosomal protein L20

Chain BS

50S ribosomal protein L22