IL_4V6I_023
3D structure
- PDB id
- 4V6I (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Localization of the small subunit ribosomal proteins into a 6.1 A cryo-EM map of Saccharomyces cerevisiae translating 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 8.8 Å
Loop
- Sequence
- GUGCCAG*CGGUAAUUC
- Length
- 16 nucleotides
- Bulged bases
- 4V6I|1|CA|A|579
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V6I_023 not in the Motif Atlas
- Homologous match to IL_4V88_415
- Geometric discrepancy: 0.2425
- The information below is about IL_4V88_415
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_54177.1
- Basepair signature
- cWW-cSW-tWH-L-R-L-R-tHS-cWW
- Number of instances in this motif group
- 5
Unit IDs
4V6I|1|CA|G|562
4V6I|1|CA|U|563
4V6I|1|CA|G|564
4V6I|1|CA|C|565
4V6I|1|CA|C|566
4V6I|1|CA|A|567
4V6I|1|CA|G|568
*
4V6I|1|CA|C|575
4V6I|1|CA|G|576
4V6I|1|CA|G|577
4V6I|1|CA|U|578
4V6I|1|CA|A|579
4V6I|1|CA|A|580
4V6I|1|CA|U|581
4V6I|1|CA|U|582
4V6I|1|CA|C|583
Current chains
- Chain CA
- 18S rRNA
Nearby chains
- Chain AB
- 40S ribosomal protein rpS3 (S3p)
- Chain AC
- 40S ribosomal protein rpS9 (S4p)
- Chain AL
- 40S ribosomal protein rpS23 (S12p)
- Chain CC
- MRNA, RNA (5'-R(P*AP*AP*AP*AP*GP*AP*CP*UP*UP*CP*A)-3')
Coloring options: