IL_4V6I_024

3D structure

PDB id

4V6I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Localization of the small subunit ribosomal proteins into a 6.1 A cryo-EM map of Saccharomyces cerevisiae translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

8.8 Å

Loop

Sequence

GUUAAAA*UC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6I_024 not in the Motif Atlas

Homologous match to IL_4V88_416

Geometric discrepancy: 0.2958

The information below is about IL_4V88_416

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_38186.3

Basepair signature

cWW-L-cWW-R-L-R

Number of instances in this motif group

5

Unit IDs

4V6I|1|CA|G|616
4V6I|1|CA|U|617
4V6I|1|CA|U|618
4V6I|1|CA|A|619
4V6I|1|CA|A|620
4V6I|1|CA|A|621
4V6I|1|CA|A|622
*
4V6I|1|CA|U|1104
4V6I|1|CA|C|1105

Current chains

Chain CA

18S rRNA

Nearby chains

Chain AE

40S ribosomal protein rpS2 (S5p)

Chain AL

40S ribosomal protein rpS23 (S12p)