IL_4V6I_026
3D structure
- PDB id
- 4V6I (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Localization of the small subunit ribosomal proteins into a 6.1 A cryo-EM map of Saccharomyces cerevisiae translating 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 8.8 Å
Loop
- Sequence
- CGUAG*UCAAG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V6I_026 not in the Motif Atlas
- Homologous match to IL_4V88_418
- Geometric discrepancy: 0.2839
- The information below is about IL_4V88_418
- Detailed Annotation
- tSH-tHW-tHS
- Broad Annotation
- No text annotation
- Motif group
- IL_17136.4
- Basepair signature
- cWW-R-L-tHS-tHW-cWW
- Number of instances in this motif group
- 18
Unit IDs
4V6I|1|CA|C|627
4V6I|1|CA|G|628
4V6I|1|CA|U|629
4V6I|1|CA|A|630
4V6I|1|CA|G|631
*
4V6I|1|CA|U|968
4V6I|1|CA|C|969
4V6I|1|CA|A|970
4V6I|1|CA|A|971
4V6I|1|CA|G|972
Current chains
- Chain CA
- 18S rRNA
Nearby chains
- Chain AL
- 40S ribosomal protein rpS23 (S12p)
- Chain AO
- 40S ribosomal protein rpS13 (S15p)
- Chain AP
- 40S ribosomal protein rpS11 (S17p)
- Chain DA
- Large subunit ribosomal RNA; LSU rRNA
Coloring options: