IL_4V6I_030
3D structure
- PDB id
- 4V6I (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Localization of the small subunit ribosomal proteins into a 6.1 A cryo-EM map of Saccharomyces cerevisiae translating 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 8.8 Å
Loop
- Sequence
- CGGGG*CAAG
- Length
- 9 nucleotides
- Bulged bases
- 4V6I|1|CA|G|876
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V6I_030 not in the Motif Atlas
- Homologous match to IL_4V88_431
- Geometric discrepancy: 0.2924
- The information below is about IL_4V88_431
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_67085.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 55
Unit IDs
4V6I|1|CA|C|874
4V6I|1|CA|G|875
4V6I|1|CA|G|876
4V6I|1|CA|G|877
4V6I|1|CA|G|878
*
4V6I|1|CA|C|950
4V6I|1|CA|A|951
4V6I|1|CA|A|952
4V6I|1|CA|G|953
Current chains
- Chain CA
- 18S rRNA
Nearby chains
- Chain AO
- 40S ribosomal protein rpS13 (S15p)
- Chain AT
- 40S ribosomal protein rpS21 (S21e)
- Chain AX
- 40S ribosomal protein rpS27 (S27e)
- Chain Bf
- 60S ribosomal protein rpL30 (L30e)
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