IL_4V6I_031

3D structure

PDB id

4V6I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Localization of the small subunit ribosomal proteins into a 6.1 A cryo-EM map of Saccharomyces cerevisiae translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

8.8 Å

Loop

Sequence

GUAU*AGAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6I_031 not in the Motif Atlas

Homologous match to IL_4V88_432

Geometric discrepancy: 0.4872

The information below is about IL_4V88_432

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_67085.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

55

Unit IDs

4V6I|1|CA|G|885
4V6I|1|CA|U|886
4V6I|1|CA|A|887
4V6I|1|CA|U|888
*
4V6I|1|CA|A|924
4V6I|1|CA|G|925
4V6I|1|CA|A|926
4V6I|1|CA|C|927

Current chains

Chain CA

18S rRNA

Nearby chains

Chain AK

40S ribosomal protein rpS14 (S11p)

Chain AT

40S ribosomal protein rpS21 (S21e)

Chain BB

60S ribosomal protein rpL2 (L2p)