IL_4V6I_056

3D structure

PDB id

4V6I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Localization of the small subunit ribosomal proteins into a 6.1 A cryo-EM map of Saccharomyces cerevisiae translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

8.8 Å

Loop

Sequence

CGCU*AAAAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6I_056 not in the Motif Atlas

Geometric match to IL_7R9F_001

Geometric discrepancy: 0.3927

The information below is about IL_7R9F_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_25872.4

Basepair signature

cWW-cWW-cWH-cWW

Number of instances in this motif group

5

Unit IDs

4V6I|1|CA|C|1644
4V6I|1|CA|G|1645
4V6I|1|CA|C|1646
4V6I|1|CA|U|1647
*
4V6I|1|CA|A|1753
4V6I|1|CA|A|1754
4V6I|1|CA|A|1755
4V6I|1|CA|A|1756
4V6I|1|CA|G|1757

Current chains

Chain CA

18S rRNA

Nearby chains

Chain AC

40S ribosomal protein rpS9 (S4p)

Chain AL

40S ribosomal protein rpS23 (S12p)

Chain DA

Large subunit ribosomal RNA; LSU rRNA