IL_4V6I_099
3D structure
- PDB id
- 4V6I (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Localization of the small subunit ribosomal proteins into a 6.1 A cryo-EM map of Saccharomyces cerevisiae translating 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 8.8 Å
Loop
- Sequence
- GAAAG*CUAGUAGC
- Length
- 13 nucleotides
- Bulged bases
- 4V6I|1|DA|A|933, 4V6I|1|DA|G|937
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V6I_099 not in the Motif Atlas
- Homologous match to IL_5TBW_028
- Geometric discrepancy: 0.2371
- The information below is about IL_5TBW_028
- Detailed Annotation
- tHW-tHW cross-strand stack
- Broad Annotation
- No text annotation
- Motif group
- IL_17470.7
- Basepair signature
- cWW-tWW-L-R-tWH-L-cWW
- Number of instances in this motif group
- 7
Unit IDs
4V6I|1|DA|G|805
4V6I|1|DA|A|806
4V6I|1|DA|A|807
4V6I|1|DA|A|808
4V6I|1|DA|G|809
*
4V6I|1|DA|C|931
4V6I|1|DA|U|932
4V6I|1|DA|A|933
4V6I|1|DA|G|934
4V6I|1|DA|U|935
4V6I|1|DA|A|936
4V6I|1|DA|G|937
4V6I|1|DA|C|938
Current chains
- Chain DA
- 25S rRNA
Nearby chains
- Chain BD
- 60S ribosomal protein rpL4 (L4p)
- Chain BL
- 60S ribosomal protein rpL13 (L13e)
- Chain BO
- 60S ribosomal protein rpL28 (L15p)
- Chain BP
- 60S ribosomal protein rpL15 (L15e)
- Chain Bl
- 60S ribosomal protein rpL37 (L37e)
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